RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00702
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00702
Molecule name [?]:	THE STRUCTURE OF A RIBOSOMAL PROTEIN S8/SPC OPERON MRNA COMPLEX
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1S03
Reference [?]:	H.J.MERIANOS,J.WANG,P.B.MOORE. THE STRUCTURE OF A RIBOSOMAL PROTEIN S8/SPC OPERON MRNA COMPLEX.. RNA V. 10 954 2004 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Other Ribosomal RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	94
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	22
Number of paired bases [?]:	72

Click on any header below for additional features.

Stem features

Number of stems [?]:	10
Number of base pairs in stems [?]:	36
Maximum length of a stem [?]:	6
Average length of a stem [?]:	3.6
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-2.1
Average estimated free energy [?]:	-6.32
Minimum estimated free energy [?]:	-12.7

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	6
Average number of free bases in hairpin loops [?]:	6
Minimum number of free bases in hairpin loop [?]:	6

Bulge loop features

Number of bulge loops [?]:	8
Maximum number of free bases in bulge loops [?]:	2
Average number of free bases in bulge loops [?]:	0.62
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features