RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00726 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00726 Molecule name [?]: JOINT X-RAY AND NMR REFINEMENT OF YEAST L30E-MRNA COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 1T0K Reference [?]: J.A.CHAO,J.R.WILLIAMSON. JOINT X-RAY AND NMR REFINEMENT OF THE YEAST L30E-MRNA COMPLEX. STRUCTURE V. 12 1165 2004 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SACCHAROMYCES CEREVISIAE Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.24 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 27 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 9 Number of paired bases [?]: 18

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 9 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.9 Average estimated free energy [?]: -8.2 Minimum estimated free energy [?]: -8.5

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 6 Average number of free bases in internal loops: 4.5 Minimum number of free bases in internal loop: 3 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 3 Minimum internal loop absolute asymmetry: 3 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 2

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia