RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00729
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00729
Molecule name [
?
]:
THE FIRST LEFT-HANDED RNA STRUCTURE OF (CGCGCG)2, Z-RNA, NMR, 12 STRUCTURES, DETERMINED IN HIGH SALT
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1T4X
Reference [
?
]:
M.POPENDA,J.MILECKI,R.W.ADAMIAK. HIGH SALT SOLUTION STRUCTURE OF A LEFT-HANDED RNA DOUBLE HELIX.. NUCLEIC ACIDS RES. V. 32 4044 2004 ASTM NARHAD UK ISSN 0305-1048
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
2
Length [
?
]:
12
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
NDB_00071
,
NDB_00072
,
NDB_00075
,
PDB_00455
,
PDB_00639
,
PDB_00188
,
PDB_01288
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
0
Number of paired bases [
?
]:
12
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
6
Maximum length of a stem [
?
]:
6
Average length of a stem [
?
]:
6
Minimum length of a stem [
?
]:
6
Maximum estimated free energy [
?
]:
-14
Average estimated free energy [
?
]:
-14
Minimum estimated free energy [
?
]:
-14
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
0
Average number of free bases in hairpin loops [
?
]:
0
Minimum number of free bases in hairpin loop [
?
]:
0
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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