RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00729
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Format:
Molecule ID [?]:PDB_00729
Molecule name [?]:THE FIRST LEFT-HANDED RNA STRUCTURE OF (CGCGCG)2, Z-RNA, NMR, 12 STRUCTURES, DETERMINED IN HIGH SALT
Source [?]:RCSB Protein Data Bank
Source ID [?]:1T4X
Reference [?]:M.POPENDA,J.MILECKI,R.W.ADAMIAK. HIGH SALT SOLUTION STRUCTURE OF A LEFT-HANDED RNA DOUBLE HELIX.. NUCLEIC ACIDS RES. V. 32 4044 2004 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:12
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00071, NDB_00072, NDB_00075, PDB_00455, PDB_00639, PDB_00188, PDB_01288
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-14
Average estimated free energy [?]:-14
Minimum estimated free energy [?]:-14

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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