RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00730
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Format:
Molecule ID [?]:PDB_00730
Molecule name [?]:NMR STRUCTURE OF THE VS RIBOZYME STEM-LOOP V RNA IN THE ABSENCE OF MULTIVALENT IONS.
Source [?]:RCSB Protein Data Bank
Source ID [?]:1TBK
Reference [?]:D.O.CAMPBELL,P.LEGAULT. NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE VARKUD SATELLITE RIBOZYME STEM-LOOP V RNA AND MAGNESIUM-ION BINDING FROM CHEMICAL-SHIFT MAPPING. BIOCHEMISTRY V. 44 4157 2005 ASTM BICHAW US ISSN 0006-2960
Type [?]:Other Ribozyme

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:17
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00858, PDB_00859
Number of domains [?]:1
Number of unpaired bases [?]:5
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-12.5
Average estimated free energy [?]:-12.5
Minimum estimated free energy [?]:-12.5

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:5
Average number of free bases in hairpin loops [?]:5
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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