RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00740
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00740
Molecule name [?]:	J4/5 LOOP FROM THE CANDIDA ALBICANS AND CANDIDA DUBLINIENSIS GROUP I INTRONS
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1TUT
Reference [?]:	B.M.ZNOSKO,S.D.KENNEDY,P.C.WILLE,T.R.KRUGH, D.H.TURNER. STRUCTURAL FEATURES AND THERMODYNAMICS OF THE J4/5 LOOP FROM THE CANDIDA ALBICANS AND CANDIDA DUBLINIENSIS GROUP I INTRONS.. BIOCHEMISTRY V. 43 15822 2004 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Group I Intron	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	2
Length [?]:	22
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	22

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	11
Maximum length of a stem [?]:	11
Average length of a stem [?]:	11
Minimum length of a stem [?]:	11
Maximum estimated free energy [?]:	-13.8
Average estimated free energy [?]:	-13.8
Minimum estimated free energy [?]:	-13.8

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AA non-canonical base pairs:	2

Pseudoknot features