RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00746 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00746 Molecule name [?]: THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 1U63 Reference [?]: N.NEVSKAYA,S.TISHCHENKO,A.GABDOULKHAKOV,E.NIKONOVA, O.NIKONOV,A.NIKULIN,O.PLATONOVA,M.GARBER,S.NIKONOV, W.PIENDL. RIBOSOMAL PROTEIN L1 RECOGNIZES THE SAME SPECIFIC STRUCTURAL MOTIF IN ITS TARGET SITES ON THE AUTOREGULATORY MRNA AND 23S RRNA.. NUCLEIC ACIDS RES. V. 33 478 2005 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: METHANOCOCCUS JANNASCHII Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 98 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 22 Number of paired bases [?]: 76

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 38 Maximum length of a stem [?]: 10 Average length of a stem [?]: 6.33 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -8.2 Average estimated free energy [?]: -11.5 Minimum estimated free energy [?]: -17.5

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 4 Average number of free bases in bulge loops [?]: 1.25 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AG non-canonical base pairs: 4

Pseudoknot features

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