RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00752 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00752 Molecule name [?]: THE CRYSTAL STRUCTURE OF A ZINC FINGER- RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION Source [?]: RCSB Protein Data Bank Source ID [?]: 1UN6 Reference [?]: D.LU,M.A.SEARLES,A.KLUG. CRYSTAL STRUCTURE OF A ZINC-FINGER-RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION.. NATURE V. 426 96 2003 ASTM NATUAS UK ISSN 0028-0836 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: XENOPUS LAEVIS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.10 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 122 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 34 Number of paired bases [?]: 88

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 44 Maximum length of a stem [?]: 9 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -3.3 Average estimated free energy [?]: -9.89 Minimum estimated free energy [?]: -15.8

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 3.5 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 6 Average number of free bases in internal loops: 5.5 Minimum number of free bases in internal loop: 5 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.33 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.67 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 0 Average multi-loop relative asymmetry: 0 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 7 Total number of AA non-canonical base pairs: 2 Total number of AG non-canonical base pairs: 2 Total number of UU non-canonical base pairs: 3

Pseudoknot features

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