RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00879 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00879 Molecule name [?]: CRYSTAL STRUCTURE OF 7S.S SRP RNA OF M. JANNASCHII Source [?]: RCSB Protein Data Bank Source ID [?]: 1Z43 Reference [?]: T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON. STRUCTURAL INSIGHTS INTO SRP RNA: AN INDUCED FIT MECHANISM FOR SRP ASSEMBLY. RNA V. 11 1043 2005 ASTM RNARFU UK ISSN 1355-8382 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: M. JANNASCHII Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 101 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 23 Number of paired bases [?]: 78

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 39 Maximum length of a stem [?]: 10 Average length of a stem [?]: 6.5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -2.4 Average estimated free energy [?]: -10.12 Minimum estimated free energy [?]: -18

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 3 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 1.67 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 1.33 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 4 Average internal loop relative asymmetry: 2.33 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 3 Average number of free bases in multi-loops: 1 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 3 Average multi-loop absolute asymmetry: 2 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 0 Average multi-loop relative asymmetry: 0 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 8 Total number of AC non-canonical base pairs: 3 Total number of AG non-canonical base pairs: 3 Total number of GG non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

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