RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00903
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00903
Molecule name [?]:IF2, IF1, AND TRNA FITTED TO CRYO-EM DATA OF E. COLI 70S INITIATION COMPLEX
Source [?]:RCSB Protein Data Bank
Source ID [?]:1ZO1
Reference [?]:G.S.ALLEN,A.ZAVIALOV,R.GURSKY,M.EHRENBERG,J.FRANK. THE CRYO-EM STRUCTURE OF A TRANSLATION INITIATION COMPLEX FROM ESCHERICHIA COLI.. CELL (CAMBRIDGE,MASS.) V. 121 703 2005 ASTM CELLB5 US ISSN 0092-8674
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION13.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:76
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:32
Number of paired bases [?]:44

Click on any header below for additional features.

Stem features

Number of stems [?]:4
Number of base pairs in stems [?]:22
Maximum length of a stem [?]:7
Average length of a stem [?]:5.5
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-7.9
Average estimated free energy [?]:-9.23
Minimum estimated free energy [?]:-10.6

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:8
Average number of free bases in hairpin loops [?]:7.33
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.33
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:2
Average multi-loop relative asymmetry:0.42
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AG non-canonical base pairs:1

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia