RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00961
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00961
Molecule name [?]:	CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SU
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2BH2
Reference [?]:	T.T.LEE,S.AGARWALLA,R.M.STROUD. A UNIQUE RNA FOLD IN THE RUMA-RNA-COFACTOR TERNARY COMPLEX CONTRIBUTES TO SUBSTRATE SELECTIVITY AND ENZYMATIC FUNCTION.. CELL V. 120 599 2005 ASTM CELLB5 US ISSN 0092-8674
Type [?]:	Other Ribosomal RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.15 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	60
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	40
Number of paired bases [?]:	20

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	10
Maximum length of a stem [?]:	5
Average length of a stem [?]:	5
Minimum length of a stem [?]:	5
Maximum estimated free energy [?]:	-10.3
Average estimated free energy [?]:	-10.3
Minimum estimated free energy [?]:	-10.3

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features