RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00981 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00981 Molecule name [?]: CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET) AND METHION Source [?]: RCSB Protein Data Bank Source ID [?]: 2CT8 Reference [?]: K.NAKANISHI,Y.OGISO,T.NAKAMA,S.FUKAI,O.NUREKI. CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET) AND METHIONYL-ADENYLATE ANOLOGUE. TO BE PUBLISHED Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: AQUIFEX AEOLICUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 150 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 64 Number of paired bases [?]: 86

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 43 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.38 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.9 Average estimated free energy [?]: -11.9 Minimum estimated free energy [?]: -18.2

Hairpin loop features Number of hairpin loops [?]: 6 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 7.67 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 5 Average number of free bases in multi-loops: 1.75 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 5 Average multi-loop absolute asymmetry: 2.5 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 0.8 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features

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