RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00999 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00999 Molecule name [?]: COCRYSTAL STRUCTURE OF AN RNA SULFURATION ENZYME MNMA AND TRNA-GLU IN THE PRE-REACTION STATE Source [?]: RCSB Protein Data Bank Source ID [?]: 2DET Reference [?]: T.NUMATA,Y.IKEUCHI,S.FUKAI,T.SUZUKI,O.NUREKI. SNAPSHOTS OF TRNA SULPHURATION VIA AN ADENYLATED INTERMEDIATE. NATURE V. 442 419 2006 ASTM NATUAS UK ISSN 0028-0836 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 70 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 34 Number of paired bases [?]: 36

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 18 Maximum length of a stem [?]: 7 Average length of a stem [?]: 4.5 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -3.3 Average estimated free energy [?]: -8.62 Minimum estimated free energy [?]: -14.6

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 6.33 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 5 Average number of free bases in multi-loops: 3 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 5 Average multi-loop absolute asymmetry: 2.67 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 1.67 Average multi-loop relative asymmetry: 0.71 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 1 Total number of CC non-canonical base pairs: 1

Pseudoknot features

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