RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01003
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_01003
Molecule name [?]:COMPLEX STRUCTURE OF CCA ADDING ENZYME WITH MINI-HELIX LACKING CCA
Source [?]:RCSB Protein Data Bank
Source ID [?]:2DR5
Reference [?]:K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI. COMPLETE CRYSTALLOGRAPHIC ANALYSIS OF THE DYNAMICS OF CCA SEQUENCE ADDITION. NATURE V. 443 956 2006 ASTM NATUAS UK ISSN 1476-4687
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ARCHAEOGLOBUS FULGIDUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:32
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:12
Number of paired bases [?]:20

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:10
Maximum length of a stem [?]:7
Average length of a stem [?]:5
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-5.7
Average estimated free energy [?]:-11.25
Minimum estimated free energy [?]:-16.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:7
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:2
Average number of free bases in internal loops:2
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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