RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01053 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01053 Molecule name [?]: CRYSTAL STRUCTURE OF RNASE Z/TRNA(THR) COMPLEX Source [?]: RCSB Protein Data Bank Source ID [?]: 2FK6 Reference [?]: I.LI DE LA SIERRA-GALLAY,N.MATHY,O.PELLEGRINI, C.CONDON. STRUCTURE OF THE UBIQUITOUS 3' PROCESSING ENZYME RNASE Z BOUND TO TRANSFER RNA.. NAT.STRUCT.MOL.BIOL. V. 13 376 2006 US ISSN 1545-9993 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: BACILLUS SUBTILIS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 53 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 21 Number of paired bases [?]: 32

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 16 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.33 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.9 Average estimated free energy [?]: -11.1 Minimum estimated free energy [?]: -14.2

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 7.5 Minimum number of free bases in hairpin loop [?]: 7

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 3 Average number of free bases in multi-loops: 1.67 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 3 Average multi-loop absolute asymmetry: 2 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 1.5 Average multi-loop relative asymmetry: 0.54 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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