RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01076 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01076 Molecule name [?]: STRUCTURE OF SIGNAL RECOGNITION PARTICLE RECEPTOR (SR) IN COMPLEX WITH SIGNAL RECOGNITION PARTICLE ( Source [?]: RCSB Protein Data Bank Source ID [?]: 2GO5 Reference [?]: M.HALIC,M.GARTMANN,O.SCHLENKER,T.MIELKE,M.R.POOL, I.SINNING,R.BECKMANN. SIGNAL RECOGNITION PARTICLE RECEPTOR EXPOSES THE RIBOSOMAL TRANSLOCON BINDING SITE. SCIENCE V. 312 745 2006 ASTM SCIEAS US ISSN 0036-8075 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: TRITICUM SP Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 7.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 217 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 59 Number of paired bases [?]: 158

Click on any header below for additional features.

Stem features Number of stems [?]: 13 Number of base pairs in stems [?]: 79 Maximum length of a stem [?]: 12 Average length of a stem [?]: 6.08 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -3.4 Average estimated free energy [?]: -8.22 Minimum estimated free energy [?]: -20.2

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 4.25 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 4 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 1.62 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 0.75 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 1.5 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 8 Average number of free bases in multi-loops: 4 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.67 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 2 Average multi-loop relative asymmetry: 0.82 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 17 Total number of AA non-canonical base pairs: 2 Total number of AC non-canonical base pairs: 4 Total number of AG non-canonical base pairs: 8 Total number of CU non-canonical base pairs: 1 Total number of GG non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

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