RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01099 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01099 Molecule name [?]: NMR STRUCTURE AND MG2+ BINDING OF AN RNA SEGMENT THAT UNDERLIES THE L7/L12 STALK IN THE E.COLI 50S R Source [?]: RCSB Protein Data Bank Source ID [?]: 2HEM Reference [?]: Q.ZHAO,U.NAGASWAMY,H.LEE,Y.XIA,H.-C.HUAN,X.GAO, G.E.FOX. NMR STRUCTURE AND MG2+ BINDING OF AN RNA SEGMENT THAT UNDERLIES THE L7/L12 STALK IN THE E.COLI 50S RIBOSOMAL SUBUNIT. NUCLEIC ACIDS RES. V. 33 3145 2005 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 24 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 22

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 11 Maximum length of a stem [?]: 11 Average length of a stem [?]: 11 Minimum length of a stem [?]: 11 Maximum estimated free energy [?]: -18.5 Average estimated free energy [?]: -18.5 Minimum estimated free energy [?]: -18.5

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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