RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01119
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_01119
Molecule name [?]:STRUCTURE OF RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 RESOLUTION.
Source [?]:RCSB Protein Data Bank
Source ID [?]:2HW8
Reference [?]:S.TISHCHENKO,E.NIKONOVA,A.NIKULIN,N.NEVSKAYA, S.VOLCHKOV,W.PIENDL,M.GARBER,S.NIKONOV. STRUCTURE OF THE RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 A RESOLUTION: COMMON FEATURES OF CRYSTAL PACKING OF L1-RNA COMPLEXES.. ACTA CRYSTALLOGR.,SECT.D V. 62 1545 2006 ASTM ABCRE6 DK ISSN 0907-4449
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:THERMUS THERMOPHILUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.10 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:36
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:8
Number of paired bases [?]:28

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:14
Maximum length of a stem [?]:10
Average length of a stem [?]:7
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-8.8
Average estimated free energy [?]:-14.2
Minimum estimated free energy [?]:-19.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:5
Average number of free bases in internal loops:3
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:4
Minimum internal loop absolute asymmetry:4
Maximum internal loop relative asymmetry:5
Average internal loop relative asymmetry:5
Minimum internal loop relative asymmetry:5

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AG non-canonical base pairs:1

Pseudoknot features



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