RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01150 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01150 Molecule name [?]: NMR REVEALS ABSENCE OF HYDROGEN BONDING IN ADJACENT UU AND AG MISMATCHES IN AN ISOLATED INTERNAL LOO Source [?]: RCSB Protein Data Bank Source ID [?]: 2JSE Reference [?]: N.SHANKAR,T.XIA,S.D.KENNEDY,T.R.KRUGH,D.H.MATHEWS, D.H.TURNER. NMR REVEALS THE ABSENCE OF HYDROGEN BONDING IN ADJACENT UU AND AG MISMATCHES IN AN ISOLATED INTERNAL LOOP FROM RIBOSOMAL RNA. BIOCHEMISTRY V. 46 12665 2007 ASTM BICHAW US ISSN 0006-2960 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 22 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 6 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 4 Average length of a stem [?]: 4 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -7.25 Minimum estimated free energy [?]: -7.8

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 2 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features

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