RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01160 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01160 Molecule name [?]: CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2NQP Reference [?]: S.HUR,R.M.STROUD. HOW U38, 39, AND 40 OF MANY TRNAS BECOME THE TARGETS FOR PSEUDOURIDYLATION BY TRUA.. MOL.CELL V. 26 189 2007 ASTM MOCEFL US ISSN 1097-2765 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 3.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 65 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 25 Number of paired bases [?]: 40

Click on any header below for additional features.

Stem features Number of stems [?]: 5 Number of base pairs in stems [?]: 20 Maximum length of a stem [?]: 6 Average length of a stem [?]: 4 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.3 Average estimated free energy [?]: -7.12 Minimum estimated free energy [?]: -11.1

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 3 Average number of free bases in multi-loops: 1 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 3 Average multi-loop absolute asymmetry: 1.6 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1.5 Average multi-loop relative asymmetry: 0.27 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 5 Minimum number of branches in multi-loops: 5

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features

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