RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01203
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_01203
Molecule name [?]:SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:2PCW
Reference [?]:H.JIN,J.P.LORIA,P.B.MOORE. SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA. MOL.CELL V. 26 205 2007 ASTM MOCEFL US ISSN 1097-2765
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:49
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:11
Number of paired bases [?]:38

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:5
Maximum length of a stem [?]:5
Average length of a stem [?]:5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-7.6
Average estimated free energy [?]:-7.6
Minimum estimated free energy [?]:-7.6

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AG non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:14
Maximum band length:9
Average band length:7
Minimum band length:5
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:0
Average number of un-bands:0
Minimum number of un-bands:0
Maximum number of in-bands:1
Average number of in-bands:1
Minimum number of in-bands:1
Maximum number of unpaired bases:8
Average number of unpaired bases:8
Minimum number of unpaired bases:8
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:5
Maximum number of base pairs to remove, per pseudoknot:5
Average number of base pairs to remove, per pseudoknot:5
Minimum number of base pairs to remove, per pseudoknot:5
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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