RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01259
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_01259
Molecule name [?]:GLUTAMINYL-TRNA SYNTHETASE MUTANT C229R WITH BOUND ANALOG 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE
Source [?]:RCSB Protein Data Bank
Source ID [?]:2RE8
Reference [?]:T.L.BULLOCK,A.RODRIGUEZ-HERNANDEZ,E.FRANZEN, J.J.PERONA. A RATIONALLY ENGINEERED MISACYLATING AMINOACYL-TRNA SYNTHETASE. TO BE PUBLISHED
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:74
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00425, PDB_00426, PDB_00620, PDB_00621, PDB_00669, PDB_00670, PDB_00671, PDB_00672, PDB_00901, PDB_01258
Number of domains [?]:1
Number of unpaired bases [?]:28
Number of paired bases [?]:46

Click on any header below for additional features.

Stem features

Number of stems [?]:4
Number of base pairs in stems [?]:23
Maximum length of a stem [?]:8
Average length of a stem [?]:5.75
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-6.7
Average estimated free energy [?]:-10.42
Minimum estimated free energy [?]:-13.4

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:5.67
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.33
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:2
Average multi-loop relative asymmetry:0.42
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 3
Total number of AA non-canonical base pairs:1
Total number of AC non-canonical base pairs:1
Total number of UU non-canonical base pairs:1

Pseudoknot features



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