RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule RFA_00614 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: RFA_00614 Molecule name [?]: Ciliate telomerase RNA, RF00025, U22353.1/53-206 Source [?]: Rfam Database Source ID [?]: RF00025 U22353.1/206-53 Reference [?]: Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124. Type [?]: Ciliate Telomerase RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 154 Fragments used [?]: N/A Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 86 Number of paired bases [?]: 68

Click on any header below for additional features.

Stem features Number of stems [?]: 9 Number of base pairs in stems [?]: 34 Maximum length of a stem [?]: 7 Average length of a stem [?]: 3.78 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -2.86 Minimum estimated free energy [?]: -6.9

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 6.33 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.83 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 38 Average number of free bases in multi-loops: 8.17 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 38 Average multi-loop absolute asymmetry: 13.33 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 4.22 Average multi-loop relative asymmetry: 0.56 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 9 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 2 Total number of CC non-canonical base pairs: 1 Total number of CU non-canonical base pairs: 3 Total number of GG non-canonical base pairs: 2

Pseudoknot features

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