RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SRP_00063 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SRP_00063 Molecule name [?]: CAE.EL-C Source [?]: SRP Database Source ID [?]: CAE.EL-C Reference [?]: Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2003) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 31, Database Issue, 363-364 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 299 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 95 Number of paired bases [?]: 204

Click on any header below for additional features.

Stem features Number of stems [?]: 21 Number of base pairs in stems [?]: 102 Maximum length of a stem [?]: 9 Average length of a stem [?]: 4.86 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -8.3 Minimum estimated free energy [?]: -19.1

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 5.4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 4 Average number of free bases in bulge loops [?]: 1.12 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 10 Maximum number of free bases in internal loops: 5 Average number of free bases in internal loops: 2.45 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 0.9 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 1.5 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 0.86 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 1.67 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1 Average multi-loop relative asymmetry: 0.17 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 3.5 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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