RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SRP_00142 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SRP_00142 Molecule name [?]: HAL.HAL. Source [?]: SRP Database Source ID [?]: HAL.HAL. Reference [?]: Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2003) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 31, Database Issue, 363-364 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 304 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 118 Number of paired bases [?]: 186

Click on any header below for additional features.

Stem features Number of stems [?]: 26 Number of base pairs in stems [?]: 93 Maximum length of a stem [?]: 7 Average length of a stem [?]: 3.58 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -7.09 Minimum estimated free energy [?]: -15.7

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 13 Average number of free bases in hairpin loops [?]: 7 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 3 Average number of free bases in bulge loops [?]: 0.75 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 15 Maximum number of free bases in internal loops: 5 Average number of free bases in internal loops: 2.1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 0.87 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 5 Average internal loop relative asymmetry: 1.87 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 6 Average number of free bases in multi-loops: 2.11 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.22 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 3 Average multi-loop relative asymmetry: 0.61 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia