RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule SRP_00148
(click to expand/contract all tables)

Format:
Molecule ID [?]:SRP_00148
Molecule name [?]:HIS.CAP.
Source [?]:SRP Database
Source ID [?]:HIS.CAP.
Reference [?]:Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2003) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 31, Database Issue, 363-364
Type [?]:Signal Recognition Particle RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:317
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:143
Number of paired bases [?]:174

Click on any header below for additional features.

Stem features

Number of stems [?]:25
Number of base pairs in stems [?]:87
Maximum length of a stem [?]:9
Average length of a stem [?]:3.48
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-5.76
Minimum estimated free energy [?]:-21.6

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:4.5
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:3
Maximum number of free bases in bulge loops [?]:4
Average number of free bases in bulge loops [?]:1
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:14
Maximum number of free bases in internal loops:17
Average number of free bases in internal loops:2.89
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:6
Average internal loop absolute asymmetry:1.5
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:5
Average internal loop relative asymmetry:1.93
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:2.25
Minimum number of free bases in multi-loop:1
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.04
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:1.57
Minimum multi-loop relative asymmetry:0.2
Maximum number of branches in multi-loops:5
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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