RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features of secondary structure molecules (click to expand/contract all tables)
Type [?]:
(Use CTRL to select several RNA types)
Organism [?]: (any if blank)
Source [?]:
(Use CTRL to select several sources)
Source ID [?]: (any if blank)
Length [?]:

and

Validated by NMR or X-Ray [?]:
Number of molecules in complex [?]:

and

Fragment [?]:

Duplicates [?]:

Sequence [?]: (any if blank)
Abstract Shape [?]: (any if blank)

   

Click on any header below for additional search features.


Stem features
Number of stems, per molecule [?]: and
Stem length, per stem [?]: and
Estimated free energy of stem (kcal/mol), per stem [?]: and

Hairpin loop features
Number of hairpin loops per molecule [?]: and
Number of free bases in hairpin loops, per hairpin loop [?]: and
Hairpin loop sequence, including the closing base pair [?]:

Bulge loop features
Number of bulge loops, per molecule [?]: and
Number of free bases in bulge loops, per bulge loop [?]: and

Internal loop features
Number of internal loops per molecule [?]: and
Number of free bases in internal loops, per internal loop [?]: and
Internal loop asymmetry, per internal loop [?]: and

Multi-loop features
Number of multi-loops per molecule [?]: and
Number of free bases in multi-loops, per multi-loop [?]: and
Multi-loop asymmetry, per multi-loop [?] : and
Number of multi-loop branches, per multi-loop [?]: and

Pseudoknots
Number of pseudoknots per molecule [?]: and
Number of , per pseudoknot [?]: and
Minimum number of to remove in order to break the pseudoknot, per pseudoknot [?]: and
Several ways to remove minimum number of base pairs, per pseudoknot [?]:
Length of pseudoknot, per pseudoknot [?]: and

Non-canonical base pairs
Number of non-canonical base pairs per molecule, whose nearest neighbours are and ,
and second nearest neighbours are and [?]:
and

   


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