RNA STRAND search page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Type [?]:

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Organism [?]:

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Source [?]:

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Source ID [?]: (any if blank)

Length [?]:

and

Validated by NMR or X-Ray [?]:

Number of molecules in complex [?]:

and

Fragment [?]:

Duplicates [?]:

Sequence [?]:

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Abstract Shape [?]:

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Click on any header below for additional search features.

Stem features

Number of stems, per molecule [?]:	and
Stem length, per stem [?]:	and
Estimated free energy of stem (kcal/mol), per stem [?]:	and

Hairpin loop features

Number of hairpin loops per molecule [?]:	and
Number of free bases in hairpin loops, per hairpin loop [?]:	and
Hairpin loop sequence, including the closing base pair [?]:

Bulge loop features

Number of bulge loops, per molecule [?]:	and
Number of free bases in bulge loops, per bulge loop [?]:	and

Internal loop features

Number of internal loops per molecule [?]:	and
Number of free bases in internal loops, per internal loop [?]:	and
Internal loop asymmetry, per internal loop [?]:	and

Multi-loop features

Number of multi-loops per molecule [?]:	and
Number of free bases in multi-loops, per multi-loop [?]:	and
Multi-loop asymmetry, per multi-loop [?] :	and
Number of multi-loop branches, per multi-loop [?]:	and

Pseudoknots

Number of pseudoknots per molecule [?]:	and
Number of , per pseudoknot [?]:	and
Minimum number of to remove in order to break the pseudoknot, per pseudoknot [?]:	and
Several ways to remove minimum number of base pairs, per pseudoknot [?]:
Length of pseudoknot, per pseudoknot [?]:	and

Non-canonical base pairs

Number of non-canonical base pairs per molecule, whose nearest neighbours are and ,
and second nearest neighbours are and [?]:

and