RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 707 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00177 Sprinzl tRNA RK1141 tRNA Unknown Sprinzl tRNA Database RK1141 76 SPR_00178 Sprinzl tRNA RK1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RK1540 76 SPR_00179 Sprinzl tRNA RK1541 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RK1541 76 SPR_00180 Sprinzl tRNA RK1660 tRNA Unknown Sprinzl tRNA Database RK1660 76 SPR_00181 Sprinzl tRNA RK2530 tRNA Unknown Sprinzl tRNA Database RK2530 75 SPR_00182 Sprinzl tRNA RK4000 tRNA Unknown Sprinzl tRNA Database RK4000 74 SPR_00183 Sprinzl tRNA RK4670 tRNA Unknown Sprinzl tRNA Database RK4670 76 SPR_00184 Sprinzl tRNA RK4800 tRNA Unknown Sprinzl tRNA Database RK4800 73 SPR_00185 Sprinzl tRNA RK4810 tRNA Unknown Sprinzl tRNA Database RK4810 76 SPR_00186 Sprinzl tRNA RK4811 tRNA Unknown Sprinzl tRNA Database RK4811 76

Analyse the 707 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 707 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 707 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia