RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00251 RNase P RNA, Pichia guilliermondii, strain NRRL Y-2075 RNase P RNA Unknown RNase P Database Pichia guilliermondii, strain NRRL Y-2075 189 ASE_00252 RNase P RNA, Prochlorothrix hollandica, strain PCC 9006 RNase P RNA Unknown RNase P Database Prochlorothrix hollandica, strain PCC 9006 481 ASE_00253 RNase P RNA, Pyrococcus horikoshii, strain OT3 RNase P RNA Pyrococcus horikoshii RNase P Database Pyrococcus horikoshii, strain OT3 329 ASE_00254 RNase P RNA, Propioniferax innocua, strain DSM 8251 RNase P RNA Unknown RNase P Database Propioniferax innocua, strain DSM 8251 272 ASE_00255 RNase P RNA, Prochlorococcus marinus, strain CCMP 1375 RNase P RNA Unknown RNase P Database Prochlorococcus marinus, strain CCMP 1375 387 ASE_00256 RNase P RNA, Prochlorococcus marinus, strain CCMP 1375 RNase P RNA Unknown RNase P Database Prochlorococcus marinus, strain CCMP 1375 387 ASE_00257 RNase P RNA, Planctomyces maris, strain ATCC 29201 RNase P RNA Unknown RNase P Database Planctomyces maris, strain ATCC 29201 320 ASE_00258 RNase P RNA, Pichia mississippiensis, strain NRRL YB-1294-7 RNase P RNA Unknown RNase P Database Pichia mississippiensis, strain NRRL YB-1294-7 232 ASE_00259 RNase P RNA, Porphyra purpurea RNase P RNA Unknown RNase P Database Porphyra purpurea 383 ASE_00260 RNase P RNA, Pseudomonas putida, strain IAM 1236 RNase P RNA Unknown RNase P Database Pseudomonas putida, strain IAM 1236 295

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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