RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00351 RNase P RNA, Saccharomyces uvarum RNase P RNA Unknown RNase P Database Saccharomyces uvarum 369 ASE_00352 RNase P RNA, Schizosaccharomyces versatilis RNase P RNA Unknown RNase P Database Schizosaccharomyces versatilis 286 ASE_00353 RNase P RNA, Saccharomonospora viridis, strain K185 RNase P RNA Unknown RNase P Database Saccharomonospora viridis, strain K185 341 ASE_00354 RNase P RNA, Saccharomonospora viridis, strain K191 RNase P RNA Unknown RNase P Database Saccharomonospora viridis, strain K191 341 ASE_00355 RNase P RNA, Saccharomonospora viridis, strain K197 RNase P RNA Unknown RNase P Database Saccharomonospora viridis, strain K197 341 ASE_00356 RNase P RNA, Saccharomonospora viridis, strain K73T RNase P RNA Unknown RNase P Database Saccharomonospora viridis, strain K73T 341 ASE_00357 RNase P RNA, Saccharomonospora sp., strain K180 RNase P RNA Unknown RNase P Database Saccharomonospora sp., strain K180 337 ASE_00358 RNase P RNA, Sludge 1-1 RNase P RNA Unknown RNase P Database Sludge 1-1 252 ASE_00359 RNase P RNA, Wastewater SL2D RNase P RNA Unknown RNase P Database Wastewater SL2D 293 ASE_00360 RNase P RNA, Wastewater SL-C RNase P RNA Unknown RNase P Database Wastewater SL-C 243

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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