RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00024 d.16.a.H.volcanii 16S rRNA Unknown Gutell Lab CRW Site d.16.a.H.volcanii 1474 CRW_00025 d.16.a.Halobacterium.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.a.Halobacterium.sp 1473 CRW_00026 d.16.a.M.formicicum 16S rRNA Unknown Gutell Lab CRW Site d.16.a.M.formicicum 1477 CRW_00027 d.16.a.M.hungatei 16S rRNA Unknown Gutell Lab CRW Site d.16.a.M.hungatei 1467 CRW_00028 d.16.a.M.thermautotrophicus.1 16S rRNA Unknown Gutell Lab CRW Site d.16.a.M.thermautotrophicus.1 1481 CRW_00029 d.16.a.M.thermautotrophicus.2 16S rRNA Unknown Gutell Lab CRW Site d.16.a.M.thermautotrophicus.2 1481 CRW_00030 d.16.a.M.vannielii 16S rRNA Unknown Gutell Lab CRW Site d.16.a.M.vannielii 1468 CRW_00031 d.16.a.N.bangense 16S rRNA Unknown Gutell Lab CRW Site d.16.a.N.bangense 1476 CRW_00032 d.16.a.N.equitans 16S rRNA Unknown Gutell Lab CRW Site d.16.a.N.equitans 1501 CRW_00033 d.16.a.N.innermongoliae 16S rRNA Unknown Gutell Lab CRW Site d.16.a.N.innermongoliae 1473

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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