RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: 16S Ribosomal RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 723 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00284 d.16.c.P.littoralis 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.littoralis 1505 CRW_00285 d.16.c.P.minor 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.minor 1496 CRW_00286 d.16.c.P.palmata 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.palmata 1486 CRW_00287 d.16.c.P.parkeae 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.parkeae 1549 CRW_00288 d.16.c.P.thurberi 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.thurberi 1531 CRW_00289 d.16.c.P.wickerhamii 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.wickerhamii 1543 CRW_00290 d.16.c.R.communis 16S rRNA Unknown Gutell Lab CRW Site d.16.c.R.communis 1490 CRW_00291 d.16.c.S.pseudocostatum 16S rRNA Unknown Gutell Lab CRW Site d.16.c.S.pseudocostatum 1491 CRW_00292 d.16.c.T.gondii 16S rRNA Unknown Gutell Lab CRW Site d.16.c.T.gondii 1500 CRW_00293 d.16.c.Z.mays 16S rRNA Unknown Gutell Lab CRW Site d.16.c.Z.mays 1490

Analyse the 723 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 723 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 723 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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