RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Cis-regulatory element Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 41 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00793 Gammaretrovirus core encapsidation signal, RF00374, M64095.1/673-772 Cis-reg. element Unknown Rfam Database RF00374 M64095.1/772-673 100 RFA_00794 Gammaretrovirus core encapsidation signal, RF00374, M93134.1/274-374 Cis-reg. element Unknown Rfam Database RF00374 M93134.1/374-274 101 RFA_00795 Gammaretrovirus core encapsidation signal, RF00374, M96854.1/729-829 Cis-reg. element Unknown Rfam Database RF00374 M96854.1/829-729 101 RFA_00796 Gammaretrovirus core encapsidation signal, RF00374, S80082.1/697-796 Cis-reg. element Unknown Rfam Database RF00374 S80082.1/796-697 100 RFA_00797 Gammaretrovirus core encapsidation signal, RF00374, U00220.1/894-994 Cis-reg. element Human immunodeficiency virus 1 Rfam Database RF00374 U00220.1/994-894 101 RFA_00798 Gammaretrovirus core encapsidation signal, RF00374, U13766.1/293-392 Cis-reg. element Unknown Rfam Database RF00374 U13766.1/392-293 100 RFA_00799 Gammaretrovirus core encapsidation signal, RF00374, U94692.1/274-374 Cis-reg. element Unknown Rfam Database RF00374 U94692.1/374-274 101 RFA_00800 Gammaretrovirus core encapsidation signal, RF00374, V01185.1/721-821 Cis-reg. element Unknown Rfam Database RF00374 V01185.1/821-721 101 RFA_00801 Gammaretrovirus core encapsidation signal, RF00374, X01616.1/1340-1440 Cis-reg. element Unknown Rfam Database RF00374 X01616.1/1440-1340 101 RFA_00802 Gammaretrovirus core encapsidation signal, RF00374, X14576.1/670-769 Cis-reg. element Unknown Rfam Database RF00374 X14576.1/769-670 100

Analyse the 41 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 41 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 41 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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