RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00809 SOLUTION STRUCTURE OF THE EXTENDED U6 ISL AS OBSERVED IN THE U2/U6 COMPLEX FROM SACCHAROMYCES CEREVI Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XHP 32 PDB_00810 THE STRUCTURE OF A RIGOROUSLY CONSERVED RNA ELEMENT WITHIN THE SARS VIRUS GENOME Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XJR 47 PDB_00815 CRYSTAL STRUCTURE OF ALFALFA MOSAIC VIRUS RNA 3'UTR IN COMPLEX WITH COAT PROTEIN N TERMINAL PEPTIDE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XOK 36 PDB_00816 HIV-1 SUBTYPE F GENOMIC RNA DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XP7 46 PDB_00817 HIV-1 SUBTYPE B GENOMIC RNA DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XPE 46 PDB_00818 HIV-1 SUBTYPE A GENOMIC RNA DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XPF 46 PDB_00823 SOLUTION NMR STRUCTURE OF RNA INTERNAL LOOP WITH THREE CONSECUTIVE SHEARED GA PAIRS IN 5'GGUGGAGGCU/ Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XV0 20 PDB_00825 SOLUTION STRUCTURE OF AUCGCA LOOP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XWP 15 PDB_00826 SOLUTION STRUCTURE OF ACAUAGA LOOP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XWU 16 PDB_00831 HIV-1 DIS RNA SUBTYPE F- MN SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y3O 46

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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