RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00832 HIV-1 DIS RNA SUBTYPE F- MPD FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y3S 46 PDB_00834 HIV-1 DIS(MAL) DUPLEX BA-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y6S 46 PDB_00835 HIV-1 DIS(MAL) DUPLEX CO HEXAMINE-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y6T 46 PDB_00836 HIV-1 DIS(MAL) DUPLEX PT-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y73 46 PDB_00837 HIV-1 DIS(MAL) DUPLEX MN-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y90 46 PDB_00838 HIV-1 DIS(MAL) DUPLEX PB-SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y95 46 PDB_00839 HIV-1 SUBTYPE A DIS RNA DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Y99 46 PDB_00842 SOLUTION STRUCTURE OF THE SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, 20 LOWEST ENERGY STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YG3 28 PDB_00843 SOLUTION STRUCTURE OF THE SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, REGULARIZED AVERAGE STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YG4 28 PDB_00857 SOLUTION STRUCTURE OF THE P2B-P3 PSEUDOKNOT FROM HUMAN TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YMO 47

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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