RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00865 SOLUTION STRUCTURE OF THE CENTRAL REGION OF THE HUMAN GLUR- B R/G PRE-MRNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YSV 27 PDB_00866 STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF THE GUIDE RNA STRAND BY THE A. FULGIDUS PIWI PRO Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YTU 19 PDB_00867 STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YTY 18 PDB_00868 RO AUTOANTIGEN COMPLEXED WITH RNAS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YVP 52 PDB_00869 HIV-1 DIS RNA SUBTYPE F- ZN SOAKED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YXP 46 PDB_00870 CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING A 2'-AMINE SUBSTITUTION AND A 2'-AMIDE PRODUCT PRODUCE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YY0 48 PDB_00871 CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA AT 2.5-ANGST Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YYK 48 PDB_00872 CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YYO 48 PDB_00873 CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.8-ANGST Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YYW 96 PDB_00874 CRYSTAL STRUCTURE OF RNASE III MUTANT E110Q FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YZ9 44

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia