RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00875 CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING A SITE SPECIFIC 2'-AMINE SUBSTITUTION AT A C-G WATSON- Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1YZD 48 PDB_00876 SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT INDUCING ELEMENT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z2J 45 PDB_00877 NMR STRUCTURE OF THE APICAL PART OF STEMLOOP D FROM CLOVERLEAF 1 OF BOVINE ENTEROVIRUS 1 RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z30 18 PDB_00878 THE STRUCTURE OF AN ENZYME-ACTIVATING FRAGMENT OF HUMAN TELOMERASE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z31 32 PDB_00881 CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING SITE SPECIFIC 2'-AMINE SUBSTITUTION AT A C-A MISMATCH Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z79 48 PDB_00882 CRYSTAL STRUCTURE OF 16 BASE PAIR RNA DUPLEX CONTAINING A C- A MISMATCH Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Z7F 48 PDB_00884 SOLUTION STRUCTURE OF BIV TAR HAIRPIN COMPLEXED TO JDV TAT ARGININE-RICH MOTIF Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZBN 28 PDB_00885 STRUCTURE OF THE RNA SIGNAL ESSENTIAL FOR TRANSLATIONAL FRAMESHIFTING IN HIV-1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZC5 41 PDB_00886 HIV-1 DIS RNA SUBTYPE F- MONOCLINIC FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZCI 92 PDB_00892 CRYSTAL STRUCTURE OF A PATHOGENIC RNA: CUG REPEATS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZEV 72

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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