RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 707 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00036 Sprinzl tRNA RD7780 tRNA Unknown Sprinzl tRNA Database RD7780 75 SPR_00037 Sprinzl tRNA RD9160 tRNA Unknown Sprinzl tRNA Database RD9160 76 SPR_00038 Sprinzl tRNA RD9161 tRNA Unknown Sprinzl tRNA Database RD9161 75 SPR_00039 Sprinzl tRNA RD9220 tRNA Unknown Sprinzl tRNA Database RD9220 76 SPR_00040 Sprinzl tRNA RD9280 tRNA Unknown Sprinzl tRNA Database RD9280 75 SPR_00041 Sprinzl tRNA RD9290 tRNA XENOPUS LAEVIS Sprinzl tRNA Database RD9290 75 SPR_00042 Sprinzl tRNA RE0500 tRNA Unknown Sprinzl tRNA Database RE0500 78 SPR_00043 Sprinzl tRNA RE0501 tRNA Unknown Sprinzl tRNA Database RE0501 78 SPR_00044 Sprinzl tRNA RE1140 tRNA Unknown Sprinzl tRNA Database RE1140 76 SPR_00045 Sprinzl tRNA RE1660 tRNA Unknown Sprinzl tRNA Database RE1660 76

Analyse the 707 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 707 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 707 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia