RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Rfam Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 313 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00799 Gammaretrovirus core encapsidation signal, RF00374, U94692.1/274-374 Cis-reg. element Unknown Rfam Database RF00374 U94692.1/374-274 101 RFA_00800 Gammaretrovirus core encapsidation signal, RF00374, V01185.1/721-821 Cis-reg. element Unknown Rfam Database RF00374 V01185.1/821-721 101 RFA_00801 Gammaretrovirus core encapsidation signal, RF00374, X01616.1/1340-1440 Cis-reg. element Unknown Rfam Database RF00374 X01616.1/1440-1340 101 RFA_00802 Gammaretrovirus core encapsidation signal, RF00374, X14576.1/670-769 Cis-reg. element Unknown Rfam Database RF00374 X14576.1/769-670 100 RFA_00803 Gammaretrovirus core encapsidation signal, RF00374, Z11128.1/274-374 Cis-reg. element Unknown Rfam Database RF00374 Z11128.1/374-274 101 RFA_00804 RNAIII, RF00503, AF230358.1/492-4 RNAIII Staphylococcus aureus Rfam Database RF00503 AF230358.1/4-492 489 RFA_00805 RNAIII, RF00503, AF288215.1/517-1 RNAIII Staphylococcus aureus Rfam Database RF00503 AF288215.1/1-517 517 RFA_00806 RNAIII, RF00503, BX571856.1/2183866-2183350 RNAIII Unknown Rfam Database RF00503 BX571856.1/2183350-2183866 517 RFA_00807 RNAIII, RF00503, BX571857.1/2086973-2086458 RNAIII Unknown Rfam Database RF00503 BX571857.1/2086458-2086973 516 RFA_00808 RydC RNA, RF00505, AE016760.1/176652-176589 Other RNA Unknown Rfam Database RF00505 AE016760.1/176589-176652 64

Analyse the 313 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 313 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 313 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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