RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: SRP Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 383 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00281 RAT.RAT. SRP RNA Unknown SRP Database RAT.RAT. 300 SRP_00282 RHI.ORY. SRP RNA Unknown SRP Database RHI.ORY. 295 SRP_00283 RHO.PAL. SRP RNA Unknown SRP Database RHO.PAL. 105 SRP_00284 RIC.CON. SRP RNA Unknown SRP Database RIC.CON. 87 SRP_00285 RIC.PRO. SRP RNA Unknown SRP Database RIC.PRO. 87 SRP_00286 SAC.BAY. SRP RNA Unknown SRP Database SAC.BAY. 524 SRP_00287 SAC.CAS. SRP RNA Unknown SRP Database SAC.CAS. 533 SRP_00288 SAC.CER. SRP RNA Saccharomyces cerevisiae SRP Database SAC.CER. 522 SRP_00289 SAC.KL-A SRP RNA Unknown SRP Database SAC.KL-A 448 SRP_00290 SAC.KL-B SRP RNA Unknown SRP Database SAC.KL-B 449

Analyse the 383 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 383 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 383 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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