RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Sprinzl tRNA Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 622 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00242 Sprinzl tRNA RL5280 tRNA Unknown Sprinzl tRNA Database RL5280 74 SPR_00243 Sprinzl tRNA RL5281 tRNA Unknown Sprinzl tRNA Database RL5281 75 SPR_00244 Sprinzl tRNA RL5282 tRNA Unknown Sprinzl tRNA Database RL5282 75 SPR_00245 Sprinzl tRNA RL5360 tRNA Unknown Sprinzl tRNA Database RL5360 78 SPR_00246 Sprinzl tRNA RL5361 tRNA Unknown Sprinzl tRNA Database RL5361 74 SPR_00248 Sprinzl tRNA RL7630 tRNA Unknown Sprinzl tRNA Database RL7630 85 SPR_00249 Sprinzl tRNA RL7631 tRNA Unknown Sprinzl tRNA Database RL7631 85 SPR_00250 Sprinzl tRNA RL7632 tRNA Unknown Sprinzl tRNA Database RL7632 87 SPR_00251 Sprinzl tRNA RL7650 tRNA Unknown Sprinzl tRNA Database RL7650 85 SPR_00252 Sprinzl tRNA RL7660 tRNA Unknown Sprinzl tRNA Database RL7660 85

Analyse the 622 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 622 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 622 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia