RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Sprinzl tRNA Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 622 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00313 Sprinzl tRNA RP1140 tRNA Unknown Sprinzl tRNA Database RP1140 77 SPR_00314 Sprinzl tRNA RP1180 tRNA Unknown Sprinzl tRNA Database RP1180 77 SPR_00315 Sprinzl tRNA RP1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RP1540 77 SPR_00316 Sprinzl tRNA RP1700 tRNA Unknown Sprinzl tRNA Database RP1700 77 SPR_00317 Sprinzl tRNA RP1701 tRNA Unknown Sprinzl tRNA Database RP1701 77 SPR_00318 Sprinzl tRNA RP1702 tRNA Unknown Sprinzl tRNA Database RP1702 77 SPR_00319 Sprinzl tRNA RP3280 tRNA SPINACIA OLERACEA Sprinzl tRNA Database RP3280 77 SPR_00320 Sprinzl tRNA RP4000 tRNA Unknown Sprinzl tRNA Database RP4000 75 SPR_00321 Sprinzl tRNA RP4400 tRNA Unknown Sprinzl tRNA Database RP4400 78 SPR_00322 Sprinzl tRNA RP7630 tRNA Unknown Sprinzl tRNA Database RP7630 75

Analyse the 622 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 622 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 622 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia