RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00121 RNase P RNA, Enrichment H RNase P RNA Unknown RNase P Database Enrichment H 301 ASE_00122 RNase P RNA, volunteer ESH167E RNase P RNA Unknown RNase P Database volunteer ESH167E 295 ASE_00123 RNase P RNA, volunteer ESH167F RNase P RNA Unknown RNase P Database volunteer ESH167F 278 ASE_00124 RNase P RNA, volunteer ESH17b-7 RNase P RNA Unknown RNase P Database volunteer ESH17b-7 293 ASE_00125 RNase P RNA, volunteer ESH183D RNase P RNA Unknown RNase P Database volunteer ESH183D 281 ASE_00126 RNase P RNA, volunteer ESH20b-1 RNase P RNA Unknown RNase P Database volunteer ESH20b-1 285 ASE_00127 RNase P RNA, volunteer ESH20b-4 RNase P RNA Unknown RNase P Database volunteer ESH20b-4 293 ASE_00128 RNase P RNA, volunteer ESH210B RNase P RNA Unknown RNase P Database volunteer ESH210B 327 ASE_00129 RNase P RNA, volunteer ESH212C RNase P RNA Unknown RNase P Database volunteer ESH212C 355 ASE_00130 RNase P RNA, volunteer ESH21b-4 RNase P RNA Unknown RNase P Database volunteer ESH21b-4 293

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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