RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00291 RNase P RNA, Reclinomonas americana, strain ATCC50394 RNase P RNA Unknown RNase P Database Reclinomonas americana, strain ATCC50394 312 ASE_00292 RNase P RNA, Rhodobacter capsulatus, strain SB1003 RNase P RNA Unknown RNase P Database Rhodobacter capsulatus, strain SB1003 405 ASE_00293 RNase P RNA, Rattus norvegicus RNase P RNA Unknown RNase P Database Rattus norvegicus 257 ASE_00294 RNase P RNA, Rhodopseudomonas palustris RNase P RNA Unknown RNase P Database Rhodopseudomonas palustris 479 ASE_00295 RNase P RNA, Rickettsia prowazekii, strain Madrid E RNase P RNA Unknown RNase P Database Rickettsia prowazekii, strain Madrid E 385 ASE_00296 RNase P RNA, Rhodospirillum rubrum, strain 1.1.1 RNase P RNA Unknown RNase P Database Rhodospirillum rubrum, strain 1.1.1 429 ASE_00297 RNase P RNA, volunteer Rr327 RNase P RNA Unknown RNase P Database volunteer Rr327 326 ASE_00298 RNase P RNA, volunteer Rr368 RNase P RNA Unknown RNase P Database volunteer Rr368 368 ASE_00299 RNase P RNA, Sulfolobus acidocaldarius, strain P1 RNase P RNA Sulfolobus acidocaldarius RNase P Database Sulfolobus acidocaldarius, strain P1 315 ASE_00300 RNase P RNA, Staphylococcus aureus, strain WCUH29 RNase P RNA Staphylococcus aureus RNase P Database Staphylococcus aureus, strain WCUH29 397

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia