RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00113 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00113 Molecule name [?]: RNase P RNA, Enterococcus faecalis, strain JCM 5808 Source [?]: RNase P Database Source ID [?]: Enterococcus faecalis, strain JCM 5808 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 331 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 151 Number of paired bases [?]: 180

Click on any header below for additional features.

Stem features Number of stems [?]: 19 Number of base pairs in stems [?]: 90 Maximum length of a stem [?]: 12 Average length of a stem [?]: 4.74 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -7.42 Minimum estimated free energy [?]: -17.8

Hairpin loop features Number of hairpin loops [?]: 9 Maximum number of free bases in hairpin loops [?]: 17 Average number of free bases in hairpin loops [?]: 7 Minimum number of free bases in hairpin loop [?]: 3 Total number of UUCG hairpin motifs per molecule [?]: 1

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.67 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 3 Maximum number of free bases in internal loops: 12 Average number of free bases in internal loops: 6.17 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 1.67 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 4 Maximum number of free bases in multi-loops: 16 Average number of free bases in multi-loops: 2.5 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 16 Average multi-loop absolute asymmetry: 3.35 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 5.33 Average multi-loop relative asymmetry: 0.59 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 6 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of CU non-canonical base pairs: 1 Total number of GG non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia