RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule ASE_00134
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00134
Molecule name [?]:RNase P RNA, volunteer ESH7-16
Source [?]:RNase P Database
Source ID [?]:volunteer ESH7-16
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:318
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:128
Number of paired bases [?]:190

Click on any header below for additional features.

Stem features

Number of stems [?]:18
Number of base pairs in stems [?]:72
Maximum length of a stem [?]:11
Average length of a stem [?]:4
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-6.21
Minimum estimated free energy [?]:-14.8

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:4.67
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:8
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:0.88
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:2
Average number of free bases in internal loops:1.5
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:1
Average internal loop absolute asymmetry:1
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:2
Average internal loop relative asymmetry:2
Minimum internal loop relative asymmetry:2

Multi-loop features
Number of multi-loops [?]:3
Maximum number of free bases in multi-loops:27
Average number of free bases in multi-loops:4.91
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:27
Average multi-loop absolute asymmetry:8.28
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:6
Average multi-loop relative asymmetry:0.85
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.67
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:3
Number of base pairs in bands:23
Maximum band length:15
Average band length:7.67
Minimum band length:4
Maximum number of bands per pseudoknot:3
Average number of bands per pseudoknot:3
Minimum number of bands per pseudoknot:3
Maximum number of un-bands:1
Average number of un-bands:1
Minimum number of un-bands:1
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:23
Average number of unpaired bases:23
Minimum number of unpaired bases:23
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:4
Maximum number of base pairs to remove, per pseudoknot:4
Average number of base pairs to remove, per pseudoknot:4
Minimum number of base pairs to remove, per pseudoknot:4
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia