RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00002 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: NDB_00002 Molecule name [?]: NDB id adh013 Source [?]: Nucleic Acid Database Source ID [?]: adh013 Reference [?]: A.H.-J.WANG, S.FUJII, J.H.VAN BOOM, A.RICH. MOLECULAR STRUCTURE OF THE OCTAMER D(G-G-C-C-G-G-C-C) MODIFIED A-DNA. PROC.NAT.ACAD.SCI.USA V. 79 3968 1982 ASTM PNASA6 US ISSN 0027-8424 0040 Type [?]: Unknown [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-Ray; ran through RNAview Number of molecules [?]: 2 Length [?]: 16 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: NDB_00008 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -22.4 Average estimated free energy [?]: -22.4 Minimum estimated free energy [?]: -22.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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