RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00004
(click to expand/contract all tables)

Format:

Molecule ID [?]:	NDB_00004
Molecule name [?]:	CRYSTAL STRUCTURE OF D(GGGCGCCC)-HEXAGONAL FORM
Source [?]:	Nucleic Acid Database
Source ID [?]:	adh029
Reference [?]:	Z.SHAKKED,G.GUERSTEIN-GUZIKEVICH,M.EISENSTEIN, F.FROLOW,D.RABINOVICH. THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT. NATURE V. 342 456 1989 ASTM NATUAS UK ISSN 0028-0836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.90 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-22.4
Average estimated free energy [?]:	-22.4
Minimum estimated free energy [?]:	-22.4

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features