RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00005
(click to expand/contract all tables)

Format:

Molecule ID [?]:	NDB_00005
Molecule name [?]:	THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATUR
Source [?]:	Nucleic Acid Database
Source ID [?]:	adh030
Reference [?]:	M.EISENSTEIN,F.FROLOW,Z.SHAKKED,D.RABINOVICH. THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATURE. NUCLEIC ACIDS RES. V. 18 3185 1990 ASTM NARHAD UK ISSN 0305-1048
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	16
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: NDB_00006
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-18.9
Average estimated free energy [?]:	-18.9
Minimum estimated free energy [?]:	-18.9

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features