RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00009 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: NDB_00009 Molecule name [?]: RNA DOUBLE-HELICAL FRAGMENTS AT ATOMIC RESOLUTION: I. THE CRYSTAL AND MOLECULAR STRUCTURE OF SODIUM Source [?]: Nucleic Acid Database Source ID [?]: arb002 Reference [?]: N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM, A.RICH. RNA DOUBLE-HELICAL FRAGMENTS AT ATOMIC RESOLUTION: I. THE CRYSTAL AND MOLECULAR STRUCTURE OF SODIUM ADENYLYL-3',5'-URIDINE HEXAHYDRATE. J.MOL.BIOL. V. 104 109 1976 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION RANGE HIGH (ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 4 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 4

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 2 Maximum length of a stem [?]: 2 Average length of a stem [?]: 2 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -1.1 Average estimated free energy [?]: -1.1 Minimum estimated free energy [?]: -1.1

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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