RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00025
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00025
Molecule name [
?
]:
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR,
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1BZ3
Reference [
?
]:
P.C.DURANT,D.R.DAVIS. STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+-C BASE-PAIR AND BY PSEUDOURIDINE.. J.MOL.BIOL. V. 285 115 1999 ASTM JMOBAK UK ISSN 0022-2836
Type [
?
]:
Transfer RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
N/A
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
17
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00024
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
3
Number of paired bases [
?
]:
14
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
7
Maximum length of a stem [
?
]:
7
Average length of a stem [
?
]:
7
Minimum length of a stem [
?
]:
7
Maximum estimated free energy [
?
]:
-9
Average estimated free energy [
?
]:
-9
Minimum estimated free energy [
?
]:
-9
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
3
Average number of free bases in hairpin loops [
?
]:
3
Minimum number of free bases in hairpin loop [
?
]:
3
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
1
Total number of AC non-canonical base pairs:
1
Pseudoknot features
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